shiftx2.ca

SHIFTX2

Release - Version 1.08 (July 11, 2014). SHIFTX2 predicts both the backbone and side chain. Please cite the following:. Beomsoo Han, Yifeng Liu, Simon Ginzinger, and David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. doi: 10.1007/s10858-011-9478-4. To operate this server:. 1) Indicate whether the query protein is deuterated. 2) Fill in information about pH and Temperature (K). 7) Press the submit button. Combine...

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SHIFTX2 | shiftx2.ca Reviews

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Release - Version 1.08 (July 11, 2014). SHIFTX2 predicts both the backbone and side chain. Please cite the following:. Beomsoo Han, Yifeng Liu, Simon Ginzinger, and David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. doi: 10.1007/s10858-011-9478-4. To operate this server:. 1) Indicate whether the query protein is deuterated. 2) Fill in information about pH and Temperature (K). 7) Press the submit button. Combine...

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1 update news

2 performance

3 documentation

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7 about shiftx2

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9 and 2trx b

10 protein is deuterated

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SHIFTX2 | shiftx2.ca Reviews

https://shiftx2.ca

Release - Version 1.08 (July 11, 2014). SHIFTX2 predicts both the backbone and side chain. Please cite the following:. Beomsoo Han, Yifeng Liu, Simon Ginzinger, and David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. doi: 10.1007/s10858-011-9478-4. To operate this server:. 1) Indicate whether the query protein is deuterated. 2) Fill in information about pH and Temperature (K). 7) Press the submit button. Combine...

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shiftx2.ca

1

SHIFTX2 - Download Program

http://www.shiftx2.ca/download.html

Download SHIFTX2 Standalone Program. Latest Release Version: 1.09D (July 26, 2016). Download SHIFTX2 Version 1.09D for Linux. Download SHIFTX2 Version 1.09D for MAC OS X. After downloading the file, simply unzip ( eg. tar -zvxf shiftx2-v10x-linux.tgz. It and type ' make. To compile to fit your computing environment. When the compile processes are done, you may be able to test with a sample pdb (1UBQ.pdb) with a following command:. Python shiftx2.py -i 1UBQ.pdb. Operating System: LINUX, MAC OSX or UNIX.

2

SHIFTX2 - Instruction

http://www.shiftx2.ca/instruction.html

Regarding the instruction for standalone version, you can get it from README file in a download package. How to use the SHIFTX2 webserver. Indicate whether the query protein is deuterated. Fill in information about pH. By default, pH is set to 5. Fill in informationa bout Temperature (K). By default, Temperature is set to 298K. Indicate whether the phosphorylated residue. Is calculated. The chain ID should be assinged in PDB ID input box or file name. Select the output format. You desire ( tabular. View ...

3

SHIFTX2

http://www.shiftx2.ca/index.html

Release - Version 1.09D (July 26, 2015). SHIFTX2 predicts both the backbone and side chain. Please cite the following:. Beomsoo Han, Yifeng Liu, Simon Ginzinger, and David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. doi: 10.1007/s10858-011-9478-4. To operate this server:. 1) Indicate whether the query protein is deuterated. 2) Fill in information about pH and Temperature (K). 8) Press the submit button. Calcul...

4

SHIFTX2

http://www.shiftx2.ca/documentation.html

SHIFTX2: Significantly Improved Protein Chemical Shift Prediction. Supplimentary Information - PDF. Please cite the following:. Beomsoo Han, Yifeng Liu, Simon Ginzinger, and David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. doi: 10.1007/s10858-011-9478-4.

5

SHIFTX2 - Update News

http://www.shiftx2.ca/updatenews.html

Performance Tables with the latest version of SHIFTX2. SHIFTX2 version 1.09D is released. Enhanced the usability of SHIFTX2 * Debugged minor errors. SHIFTX2 version 1.09A is released. Enhanced the usability of SHIFTX2 * Fixed for batch processing * Phosphorylated Residues can be calculated * NEF format is available in output format * Minor bug fixed. SHIFTX2 version 1.08 is released. SHIFTX2 version 1.07 is released. SHIFTX2 version 1.06 is released. SHIFTX2 version 1.05 is released. SHIFTX2 version 1&#4...

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peakr.org

Webpeakr | help

http://www.peakr.org/help

Download this help page as PDF. Parameters to simulate spectra. Peakr is a software to simulate 2D solid-state NMR spectra. Parameters to simulate spectra. This section of the interface serves to initialize a protein, its chemical shifts, and the internuclear correlations of interest that define a spectrum. Once the required input parameters and data are specified, click on "Create spectrum" to initialize the spectrum. Simulated spectra will appear in the Added Spectra subsection. Chemical shifts can be ...

baldwinlab.chem.ox.ac.uk

Resources

http://baldwinlab.chem.ox.ac.uk/resources/index.html

Structures and dynamics of complex biomolecules. 03/09/01 10:34 Filed in: In-house software. A number of useful in-house programs have been produced that are available for download. Programs are either in C (making frequent use of the GSL. Python (2.7, usually requiring numpy. Modules) or a mixture of both. Outputs are produced in either gnuplot. For programs with graphical user interfaces, wx-python. All have had testing on mac, linux and windows, on both 32 and 64bit chipsets. Work in progress.]. Measu...

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SHIFTX

With this form you can predict. Please cite the following:. Stephen Neal, Alex M. Nip, Haiyan Zhang, David S. Wishart (2003) "Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts" Journal of Biomolecular NMR. To operate this server:. 1) Select the type (all, backbone or proton only) of chemical shift you want to predicted. 2) Select the output format you desire (tabular, printer friendly, BMRB format). 4) Press the submit button. Select type of chemical shift to be predicted:.

shiftx2.ca

SHIFTX2

Release - Version 1.08 (July 11, 2014). SHIFTX2 predicts both the backbone and side chain. Please cite the following:. Beomsoo Han, Yifeng Liu, Simon Ginzinger, and David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. doi: 10.1007/s10858-011-9478-4. To operate this server:. 1) Indicate whether the query protein is deuterated. 2) Fill in information about pH and Temperature (K). 7) Press the submit button. Combine...

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