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Menu | SNPeffect 4.0 | snpeffect.switchlab.org Reviews
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Submit a new SNPeffect job. 2015 VIB Switch Laboratory.
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Menu | SNPeffect 4.0 | snpeffect.switchlab.org Reviews

https://snpeffect.switchlab.org

Submit a new SNPeffect job. 2015 VIB Switch Laboratory.

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User account | SNPeffect 4.0

http://snpeffect.switchlab.org/user

Enter your SNPeffect 4.0 username. Enter the password that accompanies your username. 2015 VIB Switch Laboratory.

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Help | SNPeffect 4.0

http://snpeffect.switchlab.org/help

Issue when no structural data could be found to make a model (when there should in fact be data). 1 General site information. 11 Is registration necessary? The kind people at OpenHelix made a great introductory video of SNPeffect4. Take a look! The original post can be watched on the OpenHelix site at http:/ blog.openhelix.eu/? 3 Searching the database. 31 Explaining the filter. Search by Gene Name (e.g. TP53). Search by dbSNP identifier (e.g. rs35163653). WALTZ predicts the amylogenic regions in a prote...

3

Meta-analysis | SNPeffect 4.0

http://snpeffect.switchlab.org/meta_analysis

Please select first the mutation type to filter on. Only variants of this type will be plotted. Below you may finetune your analysis by selecting one or more diseases in the first list and/or specify keywords in the box below. Finetuning Disease type variants will search for variants annotated with that disease. Finetuning Unclassified or Polymorphism type variants will search for variants from proteins annotated with that disease. Please select the type of mutation from the list. 3M syndrome type 1 (3M1).

4

SNPeffect Jobs | SNPeffect 4.0

http://snpeffect.switchlab.org/snpeffect_jobs

Your SNPeffect job account is empty because you have not submitted any jobs yet. Click on the link below to submit your first SNPeffect job. Submit a new job. Submit a SNPeffect job. 2015 VIB Switch Laboratory.

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Search and browse | SNPeffect 4.0

http://snpeffect.switchlab.org/sequences

Is not equal to. Does not start with. Does not end with. Filter on mutation type. Filter on UniProt entry name. A maximum of 15 suggestions from the database will appear while you type. Filter on Gene Name. A maximum of 15 suggestions from the database will appear while you type. Filter on dbSNP identifier. A maximum of 15 suggestions from the database will appear while you type. 2015 VIB Switch Laboratory.

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SNPeffect | Switch Laboratory

http://www.switchlab.org/bioinformatics/snpeffect

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Http:/ snpeffect.switchlab.org. SNPeffect 4.0 is now online. Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. Reumers J, Conde L, Medina I, Maurer-Stroh S, Van Durme J, Dopazo J, Rousseau F, Schymkowitz J. Nucleic Acids Res. 2008 Jan;36(Database issue):D825-9. Nucleic Acids Res. 2012 Jan;40(1):D935-9.

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Menu | SNPeffect 4.0

Submit a new SNPeffect job. 2015 VIB Switch Laboratory.

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