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Switch Laboratory | Switch Laboratory

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. The significance of protein misfolding and aggregation on the development of human disease is often underestimated and its consequences poorly understood. Indeed, so far. Only a few dozen aggregation-associated diseases have been identified, mostly neurodegenerative disorders or systemic amyloidoses. Neurodegenerative diseases are associated with a cytotoxic gain-of-function phenotype facilitating the incrimination of pr...

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CONTACTS AT SWITCHLAB.ORG

VIB-Switch Lab

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Hannah Wilkinson

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32.2●●●●1425
jv●●●●●@gmail.com

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VIB-Switch Lab

Hannah Wilkinson

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G●t , 9052

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jv●●●●●@gmail.com

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Switch Laboratory | Switch Laboratory | switchlab.org Reviews
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Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. The significance of protein misfolding and aggregation on the development of human disease is often underestimated and its consequences poorly understood. Indeed, so far. Only a few dozen aggregation-associated diseases have been identified, mostly neurodegenerative disorders or systemic amyloidoses. Neurodegenerative diseases are associated with a cytotoxic gain-of-function phenotype facilitating the incrimination of pr...
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6 cancer research
7 bioinformatics
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10 limbo
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Switch Laboratory | Switch Laboratory | switchlab.org Reviews

https://switchlab.org

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. The significance of protein misfolding and aggregation on the development of human disease is often underestimated and its consequences poorly understood. Indeed, so far. Only a few dozen aggregation-associated diseases have been identified, mostly neurodegenerative disorders or systemic amyloidoses. Neurodegenerative diseases are associated with a cytotoxic gain-of-function phenotype facilitating the incrimination of pr...

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foldxyasara.switchlab.org foldxyasara.switchlab.org

FoldX plugin for YASARA - FoldX plugin for YASARA

FoldX plugin for YASARA. From FoldX plugin for YASARA. Redirected from Main Page. Welcome to the homepage of the FoldX plugin for YASARA. FoldX tools menu in YASARA. The FoldX plugin for YASARA is a software package to access and run FoldX commands in YASARA. FoldX is normally run from the command line without graphics. By installing the FoldX plugin for YASARA, you can access the most important FoldX tools at the touch of a button in the 3D graphical YASARA interface. You directly see the result...Atten...

solubis.switchlab.org solubis.switchlab.org

Menu | SolubiS 1.0

Submit a new SolubiS job. 2015 VIB Switch Laboratory.

limbo.switchlab.org limbo.switchlab.org

Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data | Molecular chaperone binding site prediction

Molecular chaperone binding site prediction. Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data. Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau and Joost Schymkowitz. VIB Switch Laboratory, Vrije Universiteit Brussel, Brussels, Belgium. Click on the Analyze. Button in the top menu to use the prediction server.

waltz.switchlab.org waltz.switchlab.org

Waltz

Predicting amylogenic regions in protein sequences. Paste a single sequence or several sequences in FASTA format into the field below (max 10000 letters). High Specificity (less false positives).

snpeffect.switchlab.org snpeffect.switchlab.org

Menu | SNPeffect 4.0

Submit a new SNPeffect job. 2015 VIB Switch Laboratory.

INTERNAL PAGES

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1

Contact | Switch Laboratory

http://www.switchlab.org/gmaplocation

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Department of Cellular and Molecular Medicine. Campus Gasthuisberg O&N 1. Herestraat 49 Box 802. Tel 32 16 37 25 70. Fax 32 16 37 25 71. E-mail: hannah.wilkinson@switch.vib-kuleuven.be. The Google Map below points exactly to our location on the KULeuven campus.

2

Links to laboratories | Switch Laboratory

http://www.switchlab.org/links/labs

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Protein folding and aggregation labs. Northwestern University, IL, USA. Cambridge University, UK. Scripps Institute, CA, USA. UCLA, CA, USA. Stanford University, CA, USA. Whitehead Institute, MIT, MA, USA. Stanford University, CA, USA. FRS, Cambridge University, UK. Stockholm University, Sweden. Cambridge University, UK. Cambridge University, UK. University of Pensylvania, PA, USA. KU Leuven, Belgium. KU Leuven, Belgium.

3

Switch Laboratory PhD students | Switch Laboratory

http://www.switchlab.org/team/PhD-student

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Switch Laboratory PhD students. Rob van der Kant.

4

Switch Laboratory Lab managers | Switch Laboratory

http://www.switchlab.org/team/Lab-manager

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Switch Laboratory Lab managers.

5

User account | Switch Laboratory

http://www.switchlab.org/user

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Enter your Switch Laboratory username. Enter the password that accompanies your username.

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foldxyasara.switchlab.org foldxyasara.switchlab.org

FoldX plugin for YASARA:About - FoldX plugin for YASARA

http://foldxyasara.switchlab.org/index.php/FoldX_plugin_for_YASARA:About

FoldX plugin for YASARA:About. From FoldX plugin for YASARA. The FoldX plugin for YASARA has originally been developed by Joost Van Durme. At the VIB Switch Laboratory. Located at the Katholieke Universiteit Leuven. Retrieved from " http:/ foldxyasara.switchlab.org/index.php/FoldX plugin for YASARA:About. This page was last modified on 15 March 2016, at 21:33. This page has been accessed 4,995 times. About FoldX plugin for YASARA.

limbo.switchlab.org limbo.switchlab.org

Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data | Molecular chaperone binding site prediction

http://limbo.switchlab.org/content/home

Molecular chaperone binding site prediction. Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data. Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau and Joost Schymkowitz. VIB Switch Laboratory, Vrije Universiteit Brussel, Brussels, Belgium. Click on the Analyze. Button in the top menu to use the prediction server.

limbo.switchlab.org limbo.switchlab.org

Limbo news | Molecular chaperone binding site prediction

http://limbo.switchlab.org/content/newsitems

Molecular chaperone binding site prediction. Site registration has been removed. LIMBO analysis is now open to everyone. Rearranged the prediction algorithm options. Please see the user guide. Redesigned the entire Limbo website. Free registration is now required for sequence analysis. Added a FASTA Format. Added feature: each analysis comes with a tab-delimited text file which can be imported in common spreadsheet programs. Fixed a bug in the graphical plot generation.

solubis.switchlab.org solubis.switchlab.org

SolubiS 1.0

http://solubis.switchlab.org/database

Filter on UniProt entry name. A maximum of 15 suggestions from the database will appear while you type. Filter on PDB ID. Suggestions will appear while you type. Filter on gatekeeper mutation. Increased dTANGO implies more aggregation tendency for the mutation. Decreased dTANGO implies less aggregation tendency for the mutation. Increased ddG implies reduced structure stability for the variant. Decreased ddG implies enhanced structure stability for the variant. 2015 VIB Switch Laboratory.

solubis.switchlab.org solubis.switchlab.org

Create SolubiS Job | SolubiS 1.0

http://solubis.switchlab.org/node/add/solubis-job

A name for your job. Maximum of 20 characters. Please select the input format you are providing. Enter the PDB ID in this field. Upload your PDB file here. Tick this checkbox to run FoldX RepairPDB on this PDB file. You can uncheck it if the PDB file is already repaired. 2015 VIB Switch Laboratory.

snpeffect.switchlab.org snpeffect.switchlab.org

Menu | SNPeffect 4.0

http://snpeffect.switchlab.org/menu

Submit a new SNPeffect job. 2015 VIB Switch Laboratory.

snpeffect.switchlab.org snpeffect.switchlab.org

About | SNPeffect 4.0

http://snpeffect.switchlab.org/about

Welcome to SNPeffect 4.0. Changelog, bugfixes and known bugs. SNPeffect pipeline for phenotyping coding protein variants. Functional sites and structural features. Cellular processing and posttranslational modification. Structural analysis of variants. 1 Welcome to SNPeffect 4.0. SNPeffect is a database. For phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect primarily focuses on the molecular characterization and annotation of disease and polymorphism variants in the human proteome.

snpeffect.switchlab.org snpeffect.switchlab.org

SNPeffect Jobs | SNPeffect 4.0

http://snpeffect.switchlab.org/snpeffect_jobs

Your SNPeffect job account is empty because you have not submitted any jobs yet. Click on the link below to submit your first SNPeffect job. Submit a new job. Submit a SNPeffect job. 2015 VIB Switch Laboratory.

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Switch Laboratory | Switch Laboratory

Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. The significance of protein misfolding and aggregation on the development of human disease is often underestimated and its consequences poorly understood. Indeed, so far. Only a few dozen aggregation-associated diseases have been identified, mostly neurodegenerative disorders or systemic amyloidoses. Neurodegenerative diseases are associated with a cytotoxic gain-of-function phenotype facilitating the incrimination of pr...

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