taxonomer.iobio.io
taxonomer.iobio Sample Datasets
http://taxonomer.iobio.io/info.html
Taxonomer is a kmer-based ultrafast metagenomics tool for assigning taxonomy to sequencing reads from both clinical and environmental samples. Taxonomer enables simultaneous microbial detection and human transcript quantification within a clinically meaningful timeframe (i.e. minutes). Taxonomer supports nucleotide and protein-based pathogen detection and phylogenetic classification using DNA and RNA sequencing data in a single integrated algorithmic framework. Taxonomer results are i...RNA-Seq data of a...
ucgd.genetics.utah.edu
USTAR Center for Genetic Discovery » Mark Yandell
http://ucgd.genetics.utah.edu/mark-yandell
Mark Yandell, Ph.D. To visit the Yandell Lab website. Dr Yandell is Professor of Human Genetics and H.A. and Edna Benning Presidential Endowed Chair at University of Utah. As an internationally recognized leader in software development for comparative genomics, Dr. Yandell serves as:. Director of Eccles Institute’s Bioinformatics program. Technical Director of the Utah Genome Project. Co-Director of USTAR Center for Genetic Discovery. IRB, RPPR, CITI. FML. Very nice plots showing progression of clones!
hufflab.org
Links | Huff Lab
http://www.hufflab.org/links
Chad Huff, Ph.D., Assistant Professor at MD Anderson Cancer Center. Professor of Anthropology, University of Utah. Post-doctoral Fellow, Department of Epidemiology, MD Anderson Cancer Center. Assistant Professor at the Department of Genetics, Rutgers, the State University of New Jersey. Principal Investigator, Department of Human Genetics, University of Utah. Associate Professor, Department of Human Genetics, University of Utah. Assistant Professor, Department of Epidemiology, MD Anderson Cancer Center.
genetics.utah.edu
Current Faculty | Human Genetics
http://genetics.utah.edu/current-faculty-2
ABOUT US Find out more…. Genetic Science Learning Center. Prelim Exam Abstract Examples. Tips for Scientific Presentations. SOM Seminar Series 2016-17. HG Seminar Series 2016-17. Journal Club and RIP. PhD, D.Sc. Translational control, genetic recoding. PhD, Nobel Laureate. Mouse developmental genetics, gene-targeting, genetic models of complex diseases. MD, Ph.D. Pathogen-driven evolution, evolutionary cell biology. Mobile genetic elements, genome variation and evolution, paleovirology. Lynn B. Jorde.
ucgd.genetics.utah.edu
USTAR Center for Genetic Discovery » Software
http://ucgd.genetics.utah.edu/software
This page serves as an index for the applications written and distributed by the Yandell, Marth, and Quinlan labs. Each item may include links to: documentation, code, and publications. Software is listed with most recent releases first. VARPRISM (VARiant PRIoritization SuM). Annotates a VCF with any number of sorted and tabixed input BED, BAM, and VCF files in parallel. It does this by finding overlaps as it streams over the data and applying user-defined operations on the overlapping annotations. Genom...
biobeat.nigms.nih.gov
Diseases | Biomedical Beat Blog - National Institute of General Medical Sciences
https://biobeat.nigms.nih.gov/tag/diseases
Biomedical Beat Blog – National Institute of General Medical Sciences. Skip to primary content. Skip to secondary content. More News, Images and Videos, Profiles. August 14, 2015. View Comments (1) ↓. Continue reading →. Digging Deeply Into Data for the Causes of Disease. March 31, 2015. View Comments (1) ↓. 2014 Mar 7;289(10):6709-26. The cause of Huntington’s disease, a degenerative neurological disorder with no known cure, may appear simple. It begins with a change in a single gene that alters the...
biobeat.nigms.nih.gov
Bioinformatics | Biomedical Beat Blog - National Institute of General Medical Sciences
https://biobeat.nigms.nih.gov/tag/bioinformatics
Biomedical Beat Blog – National Institute of General Medical Sciences. Skip to primary content. Skip to secondary content. More News, Images and Videos, Profiles. El Niño Season Temperatures Linked to Dengue Epidemics. November 09, 2015. No Comments ↓. In a study published last month. Proceedings of the National Academy of Sciences. Researchers reported a link between intense dengue fever epidemics in Southeast Asia and the high temperatures that a previous El Niño weather event brought to that region.
genetics.utah.edu
Faculty | Human Genetics
http://www.genetics.utah.edu/faculty
ABOUT US Find out more…. Genetic Science Learning Center. Prelim Exam Abstract Examples. Tips for Scientific Presentations. SOM Seminar Series 2016-17. HG Seminar Series 2016-17. Journal Club and RIP. PhD, D.Sc. Translational control, genetic recoding. PhD, Nobel Laureate. Mouse developmental genetics, gene-targeting, genetic models of complex diseases. MD, Ph.D. Pathogen-driven evolution, evolutionary cell biology. Mobile genetic elements, genome variation and evolution, paleovirology. Lynn B. Jorde.
hufflab.org
Variant Annotation, Analysis and Search Tool (VAAST) | Huff Lab
http://www.hufflab.org/software/vaast
Variant Annotation, Analysis and Search Tool (VAAST) Huff Lab. Chad Huff, Ph.D., Assistant Professor at MD Anderson Cancer Center. Variant Annotation, Analysis and Search Tool (VAAST). Register to download the most recent version of VAAST here. Singleton, Marc V. Guthery, Stephen L. Voelkerding, Karl V. Chen, Karin; Kennedy, Brett; Margraf, Rebecca L. Durtschi, Jacob; Eilbeck, Karen; Reese, Martin G. Jorde, Lynn B. Huff, Chad D. Yandell, Mark. In: The American Journal of Human Genetics,. Pp 599 - 610,.
