bioinformatics.knowledgeblog.org

| The Bioinformatics Knowledgeblog

A bioinformatics tutorial resource. The Bioinformatics Knowledgeblog is a series of tutorial material covering a broad selection of topics in bioinformatics. You can learn more about the Knowledgeblog infrastructure, funding and rationale on our main site. Articles from launch day. Publishing information in the Linked Open Data cloud. Using standardized bioinformatics formats in Taverna workflows for integrating biological data. The Ondex data integration back-end - Episode 1: The Ondex philosophy. Pleas...

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| The Bioinformatics Knowledgeblog | bioinformatics.knowledgeblog.org Reviews

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A bioinformatics tutorial resource. The Bioinformatics Knowledgeblog is a series of tutorial material covering a broad selection of topics in bioinformatics. You can learn more about the Knowledgeblog infrastructure, funding and rationale on our main site. Articles from launch day. Publishing information in the Linked Open Data cloud. Using standardized bioinformatics formats in Taverna workflows for integrating biological data. The Ondex data integration back-end - Episode 1: The Ondex philosophy. Pleas...

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1 the bioinformatics knowledgeblog

2 tutorials

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4 microbase responder tutorial

5 software comparisons

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9 bioinformatics apis

10 data integration

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| The Bioinformatics Knowledgeblog | bioinformatics.knowledgeblog.org Reviews

https://bioinformatics.knowledgeblog.org

A bioinformatics tutorial resource. The Bioinformatics Knowledgeblog is a series of tutorial material covering a broad selection of topics in bioinformatics. You can learn more about the Knowledgeblog infrastructure, funding and rationale on our main site. Articles from launch day. Publishing information in the Linked Open Data cloud. Using standardized bioinformatics formats in Taverna workflows for integrating biological data. The Ondex data integration back-end - Episode 1: The Ondex philosophy. Pleas...

INTERNAL PAGES

bioinformatics.knowledgeblog.org

1

Analysing microarray data in BioConductor: figures and code | The Bioinformatics Knowledgeblog

http://bioinformatics.knowledgeblog.org/2011/06/20/analysing-microarray-data-in-bioconductor-figures-and-code

A bioinformatics tutorial resource. On June 20, 2011 by Daniel Swan in Transcriptomics. Analysing microarray data in BioConductor: figures and code. From the previous article on “ Analysing microarray data in BioConductor. 8221; the complete code listing is below. Please ensure you have your phenodata.txt file in the right directory to start with! This should produce the following figures when run:. Boxplot of data prior to normalisation:. Boxplot of data after normalisation:. RLE plots of the CEL files:.

2

Publishing information in the Linked Open Data cloud | The Bioinformatics Knowledgeblog

http://bioinformatics.knowledgeblog.org/2011/07/05/publishing-information-in-the-linked-open-data-cloud

A bioinformatics tutorial resource. On July 5, 2011 by Mikel Egana Aranguren in Data integration. Comments Off on Publishing information in the Linked Open Data cloud. Publishing information in the Linked Open Data cloud. A vision for the next generation web in which information will be provided with precise semantics, allowing computers to perform automated reasoning on it. This will enable computers to perform “Intelligent” tasks on their own. What is Linked Data? S as names for things. S so that peopl...

3

Downstream functional analysis of an ‘omics experiment using freely available tools | The Bioinformatics Knowledgeblog

http://bioinformatics.knowledgeblog.org/2011/06/20/downstream-functional-analysis-of-an-omics-experiment-using-freely-available-tools

A bioinformatics tutorial resource. On June 20, 2011 by Simon Cockell in Transcriptomics. Downstream functional analysis of an ‘omics experiment using freely available tools. In this tutorial, a number of tools for functional analysis will be introduced. We will focus on the downstream analysis of the gene list produced by the Analysing microarray data in R and BioConductor. Hypergeometric tests for over-representation of functional categories. Draws without replacement, from a finite population,. And cl...

4

Differential Producibility Analysis (DPA) of transcriptomic data to help understand metabolic status of a cell or microorganism | The Bioinformatics Knowledgeblog

http://bioinformatics.knowledgeblog.org/2011/06/21/differential-producibility-analysis-dpa-of-transcriptomic-data-to-help-understand-metabolic-status-of-a-cell-or-microorganism

A bioinformatics tutorial resource. On June 21, 2011 by Bhushan Bonde in Metabolic modelling. Differential Producibility Analysis (DPA) of transcriptomic data to help understand metabolic status of a cell or microorganism. While a vast amount of microarray data is now available freely at the various repositories at NCBI (GEO database) and EBI (ArrayExpress), there is currently no microarray data analysis methods available which can extract the global metabolic state of an microorganism or cell. Signature...

5

Using R: a guide for complete beginners | The Bioinformatics Knowledgeblog

http://bioinformatics.knowledgeblog.org/2011/06/21/using-r-a-guide-for-complete-beginners

A bioinformatics tutorial resource. On June 21, 2011 by Alastair Kerr in Statistics. Using R: a guide for complete beginners. This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis: load a table, plot some graphs, and perform some basic statistics. More extensive tutorials can be found on the project website and via bioconductor (not covered here). Http:/ www.bioconductor.org. Save as a png, pdf or svg.

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knowledgeblog.org

2011 June | Knowledge Blog

http://knowledgeblog.org/date/2011/06

Scientific Publishing for the Web Generation. Archive For June 2011. Introducing the Bioinformatics Knowledgeblog. On June 28, 2011 by Phillip Lord in Events. Last week (21st June), a small group of bioinformaticians gathered in a little room in the basement of a building on the campus of Newcastle University, and quietly bashed []. The Ontogenesis Knowledgeblog: Lightweight Semantic Publishing. On June 7, 2011 by Phillip Lord in Papers. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin.

knowledgeblog.org

Uncategorized | Knowledge Blog

http://knowledgeblog.org/category/uncategorized

Scientific Publishing for the Web Generation. Posts In Category Uncategorized. On August 19, 2013 by Lindsay Marshall in Uncategorized. Just added support to Greycite for some proprietary meta tags used by Walters Kluwer Health journals. These let us get a full set of metadata from the pages. On March 22, 2013 by Lindsay Marshall in Uncategorized. Phil Lord has been nagging me to post about the things that I have been changing and adding to the Greycite implementation, so : pubmed : if you pass [].

knowledgeblog.org

2011 March | Knowledge Blog

http://knowledgeblog.org/date/2011/03

Scientific Publishing for the Web Generation. Archive For March 2011. On March 29, 2011 by Simon Cockell in Press. Phil Lord from the Knowledgeblog project has been at the JISCMRD International Workshop in Birmingham this week. There he gave a talk: Data linking with kblog View more presentations []. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin. Health and Public Health.

knowledgeblog.org

2013 April | Knowledge Blog

http://knowledgeblog.org/date/2013/04

Scientific Publishing for the Web Generation. Archive For April 2013. On April 17, 2013 by Lindsay Marshall in tech. Greycite will now return citations in RIS format (http:/ en.wikipedia.org/wiki/RIS (file format) , though with the caveat that the Type record value is always set to be ELEC – it is difficult in []. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin. Health and Public Health.

knowledgeblog.org

Who are we? | Knowledge Blog

http://knowledgeblog.org/who-are-we-3

Scientific Publishing for the Web Generation. The current knowledgeblog team is are all active scientists broadly coming from interdisciplinary biomedical and computing science backgrounds. We have developed knowledgeblog out of a desire to improve communication and the accessibility of knowledge both within and outside of science. Contributed to the development of the knowledgeblog platform. Currently, he is the manager of the Newcastle University Bioinformatics Support Unit, where he aids biologica...

knowledgeblog.org

MathJax-Latex WordPress Plugin | Knowledge Blog

http://knowledgeblog.org/mathjax-latex-wordpress-plugin

Scientific Publishing for the Web Generation. The Knowledgeblog team have developed a plugin for WordPress that allows the easy inclusion of mathematical equations in blogposts. It leverages the MathJax. Javascript library to produce scalable, accessible, attractive graphical equations from standard LaTeX. Syntax embedded in posts. You can download the latest version of the plugin: Version 0.2 [wordpress.org]. The mathjax-latex settings page lets you configure how the plugin works. 8230;] the MathJax-LaT...

knowledgeblog.org

Advantages for Reviewers | Knowledge Blog

http://knowledgeblog.org/advantages-for-reviewers

Scientific Publishing for the Web Generation. Bottom line, you get very little out of reviewing at the moment: you don’t get paid, you don’t get acknowledged, your work goes into a blackhole. The only real advantage, is you get to read papers before they are published; it’s a service to the community. With knowledgeblog, on the other hand, your reviews are public; perhaps, a bit scary at first, but it means that your comments, your ideas have your name attached to them. Health and Public Health.

knowledgeblog.org

2013 August | Knowledge Blog

http://knowledgeblog.org/date/2013/08

Scientific Publishing for the Web Generation. Archive For August 2013. On August 19, 2013 by Lindsay Marshall in Uncategorized. Just added support to Greycite for some proprietary meta tags used by Walters Kluwer Health journals. These let us get a full set of metadata from the pages. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin. Health and Public Health.

knowledgeblog.org

Press | Knowledge Blog

http://knowledgeblog.org/category/all/press

Scientific Publishing for the Web Generation. Posts In Category Press. On March 29, 2011 by Simon Cockell in Press. Phil Lord from the Knowledgeblog project has been at the JISCMRD International Workshop in Birmingham this week. There he gave a talk: Data linking with kblog View more presentations []. On January 13, 2011 by Phillip Lord in Press. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin.

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jobsinhyderabad.com - jobsinhyderabad Resources and Information.

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特定非営利活動法人バイオインフォマティクス・ジャパン

特定非営利活動法人バイオインフォマティクスジャパン (NPO Bioinformatics Japan) は、特定非営利活動法人促進法の規定に基づく非営利団体 (NPO法人) です。その実体はDNAの塩基配列 A, C, G, T の４種類の文字列です。我が国では、ゲノムの文字列情報を生体システムの配線図情報分子間の相互作用反応ネットワーク情報に翻訳し、システムの安定性やゆらぎの観点からヒトの健康や病気、また医薬品の効果や環境物質の影響などを統合的に理解するバイオインフォマティクス技術が開発されています。翻訳のための辞書に相当する KEGG (Kyoto Encyclopedia of Genes and Genomes). ゲノム解読の意義として個別化医療 (personalized medicine) という言葉が使われるようになり、ゲノム情報の個人差と、薬に対する作用副作用などの個人差とを関連づけ、ひとりひとりに最適な治療法を選択して提供することが可能になるとされています。これを参加型医療 (participatory medicine) といいます。

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bioinformatics.knowledgeblog.org

| The Bioinformatics Knowledgeblog

A bioinformatics tutorial resource. The Bioinformatics Knowledgeblog is a series of tutorial material covering a broad selection of topics in bioinformatics. You can learn more about the Knowledgeblog infrastructure, funding and rationale on our main site. Articles from launch day. Publishing information in the Linked Open Data cloud. Using standardized bioinformatics formats in Taverna workflows for integrating biological data. The Ondex data integration back-end - Episode 1: The Ondex philosophy. Pleas...

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