metalionrna.genesilico.pl
MetalionRNAA metal ion binding site predictor. MetalionRNA is a novel bioinformatic method for predicting metal-binding sites in RNA structures.
http://metalionrna.genesilico.pl/
A metal ion binding site predictor. MetalionRNA is a novel bioinformatic method for predicting metal-binding sites in RNA structures.
http://metalionrna.genesilico.pl/
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MetalionRNA | metalionrna.genesilico.pl Reviews
https://metalionrna.genesilico.pl
A metal ion binding site predictor. MetalionRNA is a novel bioinformatic method for predicting metal-binding sites in RNA structures.
metalionrna.genesilico.pl
MetalionRNA
http://metalionrna.genesilico.pl/submit
Any PDB file containing RNA or DNA structure.');return false"/. Four-character PDB access code.');return false" /. The number of predicted binding sites which have to be done. The default value depends on the number of residues in the target structure.');return false"/. Enter hits number manually. You can define the number of predicted binding sites which have to be done.');return false"/. Minimal distance between hits:. Minimal distance between predicted hits. 20 Å for Na. And 30 Å for K.
MetalionRNA
http://metalionrna.genesilico.pl/instructions
MetalionRNA is a program for predicting binding sites of three different types of metal ions (Magnesium, Sodium and Potassium) in RNA structures. For more details see:. Philips A, Milanowska K, Lach G, Boniecki M, Rother K, Bujnicki JM MetalionRNA: computational predictor of metal-binding sites in RNA structures. Bioinformatics 2011 Nov 21. [PDF]. Which potential to choose? What do I need to analyse and display the obtained predictions? You need a molecular visualization system. We recommend PyMol Viewer...
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Bujnicki lab - RNAmap2D
http://www.genesilico.pl/software/stand-alone/rnamap2d
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - DATABASES
http://iimcb.genesilico.pl/software/databases
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - SOFTWARE
http://iimcb.genesilico.pl/software
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - PROTMAP2D
http://iimcb.genesilico.pl/software/stand-alone/protmap2d
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - SimRNA
http://iimcb.genesilico.pl/software/stand-alone/simrna
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - PROTMAP2D
http://www.genesilico.pl/software/stand-alone/protmap2d
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - SOFTWARE
http://www.genesilico.pl/software
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - SimRNA
http://www.genesilico.pl/software/stand-alone/simrna
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
Bujnicki lab - STAND-ALONE
http://www.genesilico.pl/software/stand-alone
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
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MetalionRNA
A metal ion binding site predictor. MetalionRNA is a novel bioinformatic method for predicting metal-binding sites in RNA structures.
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