digtop.de
From Disease Genes to Protein Pathways :: DiGtoP
http://www.digtop.de/tools/links.php
PANTHER - Protein Analysis Through Evolutionary Relationships. HPRD - Human Protein Reference Database. HUPO - Human Proteome Organisation. PIR - Protein Information Ressource. PSI - Protein Structure Initiative. DIP - Database of Interacting Proteins. MIPS Protein-Protein Interaction Database. SCOPPI - Structural Classification of Protein-Protein Interfaces. STITCH - Chemical-Protein Interactions. Phospho.ELM - Curated Database of Phosphorylation Sites. ELM - Database of Regulatory Motifs.
proteomescout.wustl.edu
Home - Experiments
https://proteomescout.wustl.edu/experiments
HPRD: Human Protein Reference Database Curated Modifications. July 2010 download of HPRD's modification table. Keshava Prasad TS,Goel R,Kandasamy K,Keerthikumar S,Kumar S,Mathivanan S,Telikicherla D,Raju R,Shafreen B,Venugopal A,Balakrishnan L,Marimuthu A,Banerjee S,Somanathan DS,Sebastian A,Rani S,Ray S,Harrys Kishore CJ,Kanth S,Ahmed M,Kashyap MK,Mohmood R,Ramachandra YL,Krishna V,Rahiman BA,Mohan S,Ranganathan P,Ramabadran S,Chaerkady R,Pandey A. Gupta R,Birch H,Rapacki K,Brunak S,Hansen JE. DbPTM 3&#...
syboss.eu
SyBoSS - Systems Biology of Stem Cells and Reprogramming: Our Partners
http://syboss.eu/partners.html
Go to the homepage. Skip to the navigation. Skip to the content. Skip to the sidebar. Go to the imprint. SyBoSS - Systems Biology of Stem Cells and Reprogramming. Supported by the EU Seventh Research Framework Programme (FP7). Recombineering is DNA engineering based on the use of homologous recombination in E. coli. The Stewart lab first showed that the phage proteins RecE/RecT and the Red operon of lambda phage are ideally suited for many DNA engineering tasks. To be updated soon. And eukaryotic cells (...
pandora.cs.huji.ac.il
Pandora
http://pandora.cs.huji.ac.il/index.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Welcome to Pandora version 4.2! In order to study of proteins you can choose from the top menubar:. Study a set of proteins that share an annotation. Study your own set of proteins including quantitative data. Blast a sequence and view the results in PANDORA. Match list of mass spectrometry-derived (MS) peptides to the corresponding proteins and analyze these proteins in PANDORA.
pandora.cs.huji.ac.il
Pandora
http://pandora.cs.huji.ac.il/about.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Pandora version 4.2. Department of Biological Chemistry, Institute of Life Sciences. Hebrew University, Jerusalem, Israel. School of Computer Science and Enigineering. Hebrew University, Jerusalem, Israel. You can contact us through this mail form. Kaplan N, Vaaknin A and Linial M. (2003). PANDORA: keyword-based analysis of protein sets by integration of annotation sources.
pepcyber.org
PepArray pro (P~PEP)
http://www.pepcyber.org/PepArray
Access to PepArray pro. PepArray pro supports the generation of peptide sequences containing standard or non-standard amino acids from reading user-input sequences, importing from web resources, or modifying existing peptides. Currently, phosphopeptides from the corresponding databases Phospho.ELM. And PepCyber P PEP. Please send questions and comments to PepArray@PepCyber.org. Enter parameters for rows and columns for an array. I Define peptides of a panel. A Select SEED peptides.
ppsp.biocuckoo.org
Welcome to use PPSP system
http://ppsp.biocuckoo.org/index.php
Prediction of PK-Specific Phosphorylation Site. Tips for using PPSP. 1please use 20 letters for common amino acids. 2both upper and lower cases are acceptable. 3spaces and returns in sequence are allowable. 4for fasta format, the first line should begin with ' '. 5FASTA format is required when mutliple sequences are submitted at one time. Other Phosphorylation Site Prediction Tools and Resources:. 1 Enter the sequence. Predict by all kinases. Predict by individual kinase below Group Info.
ppsp.biocuckoo.org
Welcome to use PPSP system
http://ppsp.biocuckoo.org/aboutPPSP.php
Prediction of PK-Specific Phosphorylation Site. Other Phosphorylation Site Prediction Tools and Resources:. More detail information about PPSP. PPSP has been updated to version 1.06, now multiple sequences (in FASTA format) can be submitted at one time. A breif introduction to PPSP. W ith the unambiguous experimental verified training data set, PPSP could predict the bona fide phosphorylation sites accurately for 68 PK groups. How to use PPSP:. Acceptable data formats: plain text or FASTA.
biophilessurf.info
Proteomics, biophilessurf
http://biophilessurf.info/proteomics.html
SWISS-2DPAGE: Two-dimensional polyacrylamide gel electrophoresis database. Rat Serum Protein Study Group. Rice 2D Map of anther. PMMA-2DPAGE: Purkyne Military Medical Academy 2D-PAGE database. Joint Proteomics Laboratory: JPSL Proteomic Databases. Yeast Protein Complex Database. 2D Gel Map of Saccharomyces cerevisiae (Yeast) proteins. HumAN 2D PAGE Databases for Proteome Analyses in Health and Diseases. MitoDat: A database of mitochondrial ptroteins encoded by nuclear genes. PAGE - - recipe calculator.
