psort.org

Welcome to psort.org!

PSORTorg provides links to the PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction. The page is currently hosted by the Brinkman Laboratory at Simon Fraser University, and our goal is to provide an open-source resource centre for researchers interested in subcellular localization prediction. Please choose from the following PSORT programs for localization prediction:. PSORTb v.3.0. V30: Yu et al, 2010. Datasets of Pr...

http://www.psort.org/

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Simon Fraser University, Brinkman Lab

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Simon Fraser University, Brinkman Lab

Fiona Brinkman

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Simon Fraser University, Brinkman Lab

Matthew Laird

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Welcome to psort.org! | psort.org Reviews

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PSORTorg provides links to the PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction. The page is currently hosted by the Brinkman Laboratory at Simon Fraser University, and our goal is to provide an open-source resource centre for researchers interested in subcellular localization prediction. Please choose from the following PSORT programs for localization prediction:. PSORTb v.3.0. V30: Yu et al, 2010. Datasets of Pr...

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4 psort ii

5 for eukaryotic sequences

6 psort

7 for plant sequences

8 ipsort

9 locally hosted resources

10 psortdb

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Welcome to psort.org! | psort.org Reviews

https://psort.org

PSORTorg provides links to the PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction. The page is currently hosted by the Brinkman Laboratory at Simon Fraser University, and our goal is to provide an open-source resource centre for researchers interested in subcellular localization prediction. Please choose from the following PSORT programs for localization prediction:. PSORTb v.3.0. V30: Yu et al, 2010. Datasets of Pr...

SUBDOMAINS

db-old.psort.org

PSORTdb database

A database of protein subcellular localizations for bacteria. Part of the PSORT. Family) is a database of protein subcellular localizations (SCL) for bacteria that contains both information determined through laboratory experimentation ( e. Dataset) and computational predictions ( c. Dataset). The following links offer a separately entry to each dataset allowing to browse, to query and to download them. Additional information are available under the Documentation. PSORTdb dataset v.2.0.

db.psort.org

PSORTdb :: Home

Welcome to PSORTdb 3.0. PSORTdb (part of the PSORT family. Is a database of protein subcellular localizations for bacteria and archaea that contains both information determined through laboratory experimentation (ePSORTdb dataset) and computational predictions (cPSORTdb dataset). This latest version of PSORTdb contains improved analyses for microbes with a wider diversity of cell envelope structures. For example, see a schematic of some different kinds of bacterial cell envelopes here. Pasteurella multoc...

INTERNAL PAGES

psort.org

1

PSORTb Downloads Page

http://www.psort.org/downloads/index.html

A command-line version of PSORTb for Linux and Mac OSX is available for download under the GNU General Public Licence. GNU GPL). If you make use of the program in your research, please cite one of the following, noting the version of the software :. PSORTb v.3.0:. PSORTb v.2.0:. PSORTb v.1.0:. Jennifer L. Gardy, Cory Spencer, Ke Wang, Martin Ester, Gabor E. Tusnady, Istvan Simon, Sujun Hua, Katalin deFays, Christophe Lambert, Kenta Nakai and Fiona S.L. Brinkman (2003). PSORT-B: improv...2 Required prereq...

2

PSORTb Motifs

http://www.psort.org/motifs/index.html

The motifs used in PSORTb v.3.0 and PSORTb v2.0: OMPMotif, Motif, and Profile modules are listed below. For a description of how these motifs were selected, please see the PSORT-B paper ( Gardy et al, 2003. Motif Module Motifs (Gram-negative). Motif Module Motifs (Gram-positive). Motif Module Motifs (Archaea). Profile Module Profiles (Gram-negative and Gram-positive). Profile Module Profiles (Gram-positive). Motifs used in the v.3.0 and v.2.0 OMPMotif module (279):. Cytoplasmic Membrane [HNQA].NP[STA...

3

PSORTb Subcellular Localization Prediction Tool - version 3.0

http://www.psort.org/psortb/index.html

Submit a Sequence to PSORTb version 3.0.2. Based on a study last performed in 2010, PSORTb v3.0.2 is the most precise bacterial localization prediction tool available. PSORTb v3.0.2 has a number of improvements. Over PSORTb v2.0.4. Version 2 of PSORTb is maintained here. You can currently submit one or more Gram-positive or Gram-negative bacterial sequences or archaeal sequences in FASTA format (? Limitations of PSORTb v.3.0. Docker PSORTb web service. Choose an organism type (? Choose Gram stain (?

4

Welcome to psort.org!

http://www.psort.org/index.html

PSORTorg provides links to the PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction. The page is currently hosted by the Brinkman Laboratory at Simon Fraser University, and our goal is to provide an open-source resource centre for researchers interested in subcellular localization prediction. Please choose from the following PSORT programs for localization prediction:. PSORTb v.3.0. V30: Yu et al, 2010. Datasets of Pr...

5

Welcome to psort.org!

http://www.psort.org/resources.html

PSORTorg provides links to the PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction. The page is currently hosted by the Brinkman Laboratory at Simon Fraser University, and our goal is to provide an open-source resource centre for researchers interested in subcellular localization prediction. Please choose from the following PSORT programs for localization prediction:. PSORTb v.3.0. V30: Yu et al, 2010. Datasets of Pr...

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Tools for proteome annotation and proteomics

http://crdd.osdd.net/pa.php

Data on M.tb. Computaional Resources for Proteome Annotation and Proteomics. Servers integrated at CRDD. This is a web server for analysis and comparison of two-dimensional electrophoresis (2-DE) Gel images. It helps in annotating the virual 2-D gel image proteins on the basis of known molecular weight andpH scales of the markers. This is a server forpredicting G-protein-coupled receptors and for classifying them in families and sub-families. This server can play vital role in drug design, as GPCR ar...

db-old.psort.org

PSORTdb database

http://db-old.psort.org/docs/documentation.html

A database of protein subcellular localizations for bacteria. PSORTb v.1.1.2 predictions. PSORTb v.2.0 predictions. Accessing ePSORTdb and cPSORTdb. PSORTb v.1.1.2 and v.2.0 prediction fields. PSORTdb is a database of SCL for bacteria that contains both information determined through laboratory experimentation ( e. PSORTdb dataset) and computational predictions ( c. PSORTdb database belongs to PSORT. Family which provides resources and links for subcellular localization prediction. Our automated SCL pred...

dimitrovagen677s09.weebly.com

Structure/Function - DimitrovaGen677S09

http://dimitrovagen677s09.weebly.com/structurefunction.html

This web page was produced as an assignment for Genetics 677. An undergraduate course in UW Madison. The complexity of GSK3B and GO. Wnt receptor signaling pathway through beta-catenin. Positive regulation of protein complex assembly. Positive regulation of protein export from nucleus. Glycogen synthase kinase 3 activity. Protein kinase A catalytic subunit binding. Data retrieved from UniProt. Http:/ www.uniprot.org. Structure and Function in general. All three web-based programs ( SMART. In this region ...

dimitrovagen677s09.weebly.com

References - DimitrovaGen677S09

http://dimitrovagen677s09.weebly.com/references.html

This web page was produced as an assignment for Genetics 677. An undergraduate course in UW Madison. 1 Frame, S. (2001).GSK3 takes centre stage more than 20 years after its discovery. The Biochemical journal,. 2 Kerkela, R. (2008). Deletion of GSK-3 beta in mice leads to hypertrophic cardiomyopathy secondary to cardiomyo. The journal of clinical investigation. Iss:11, 3609 -3618. Http:/ www.sciencedaily.com. 4 Congenital heart defects. Retrieved January 31,. 5 National center for biotechnology information.

crdd.imtech.res.in

Tools for proteome annotation and proteomics

http://crdd.imtech.res.in/pa.php

Data on M.tb. Computaional Resources for Proteome Annotation and Proteomics. Servers integrated at CRDD. This is a web server for analysis and comparison of two-dimensional electrophoresis (2-DE) Gel images. It helps in annotating the virual 2-D gel image proteins on the basis of known molecular weight andpH scales of the markers. This is a server forpredicting G-protein-coupled receptors and for classifying them in families and sub-families. This server can play vital role in drug design, as GPCR ar...

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psort, a fast sorting library for large datasets

A fast sorting library for large datasets. Is currently unmaintained. We plan to restart the development in the future. We will still receive your emails in the while, but we may not immediately reply. Is a fast C sorting library for large datasets. Ie that mainly fit on external storage such as hard disks). psort. Has originally been designed for desktop machines, but can now run on a variety of architectures. Has been the fastest sorting library. For desktop machines from 2008 to 2012. On-the-fly data ...

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PSORT WWW Server

Is a computer program for the prediction of protein localization sites in cells. It receives the information of an amino acid sequence and its source orgin, e.g.,. Gram-negative bacteria, as inputs. Then, it analyzes the input sequence by applying the stored rules for various sequence features of known protein sorting signals. Finally, it reports the possiblity for the input protein to be localized at each candidate site with additional information. PSORT is mirrored at Tokyo. PSORT II Users' Manual.

psort.mirror.edu.cn

Test Page for Apache Installation

If you can see this, it means that the installation of the Apache web server. Software on this system was successful. You may now add content to this directory and replace this page. Seeing this instead of the website you expected? This page is here because the site administrator has changed the configuration of this web server. Please contact the person responsible for maintaining this server with questions. The Apache documentation is available online. Or has been installed locally.

psort.org

Welcome to psort.org!

PSORTorg provides links to the PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction. The page is currently hosted by the Brinkman Laboratory at Simon Fraser University, and our goal is to provide an open-source resource centre for researchers interested in subcellular localization prediction. Please choose from the following PSORT programs for localization prediction:. PSORTb v.3.0. V30: Yu et al, 2010. Datasets of Pr...

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PSORTHomepage - PSORT

The vision of the PSORT consortium is to better understand the determinants of response of psoriasis to biologic therapies. By collaboration with our partners from industry we will develop a clinical test to predict response and thereby rationalise and optimise patient care in a cost-effective manner. The programme of research in the Psoriasis Stratification to Optimise Relevant Therapy (PSORT) consortium aims to use existing knowledge about psoriasis, both clinical and scientific. The Identification and...

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