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Laboratoire Sequence, Structure et Fonction des ARN

Page d'accueil de l'équipe SSFA de l'institut de génétique et microbiologie à l'université Paris Sud XI

http://rna.igmors.u-psud.fr/

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Laboratoire Sequence, Structure et Fonction des ARN | rna.igmors.u-psud.fr Reviews
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Page d'accueil de l'équipe SSFA de l'institut de génétique et microbiologie à l'université Paris Sud XI
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1 recherche de cible
2 cible de miARN
3 cible de miRNA
4 miRNA targets
5 ATD project
6 3' UTR
7 5' UTR
8 sRNA
9 bacterial RNA
10 cis-regulatory RNA
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research group on,software,web servers,suppl data,download,welcome,contact information,laboratory members,postdoctoral opportunity,daniel gautheret,research activity,former lab members,magali naville,antonin marchais,chongjian chen,alban ott
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Laboratoire Sequence, Structure et Fonction des ARN | rna.igmors.u-psud.fr Reviews

https://rna.igmors.u-psud.fr

Page d'accueil de l'équipe SSFA de l'institut de génétique et microbiologie à l'université Paris Sud XI

INTERNAL PAGES

rna.igmors.u-psud.fr rna.igmors.u-psud.fr
1

RNA SSF - Download

http://rna.igmors.u-psud.fr/download

RNA Sequence, Structure and Function. Contains genomic coordinates, names and flanking genes of all CNEs (conserved non-coding elements) and protein-coding genes in ncRNA-enriched clusters. One file per species. Marchais et al, Genome Res., 6:1084-92, 2009. Erpin Distribution files (current):. Erpin5.5.4.serv.tar.gz. ErpinBatch.1.4.tar.gz. Batch Erpin execution file including all RFAM 9.1 and in-house alignments Erpin Linux binaries. Read file manual.txt. Script for automatic generation of Erpin commands.

2

RNA SSF Lab - Suppl. Data

http://rna.igmors.u-psud.fr/suppl_data

RNA Sequence, Structure and Function. For "A dual model for prioritizing cancer mutations". Jia Li et al. For "An Assesment of Bacterial Small RNA Target Prediction Programs". Adrien Pain, Alban Ott, Hamza Amine, Tatiana Rochat, Philippe Bouloc, Daniel Gautheret. RNA Biol. 2015, 12:509. For "RNA at 92 C: the Non-Coding Transcriptome of the Hyperthermophile Archaea Pyrococcus abyssi". RNA Biol. 2013; 10:1211-20. For "Detection of non-coding RNA in Bacteria and Archaea using the DETR'PROK Galaxy pipeline".

3

RNA SSF Lab - Erpin

http://rna.igmors.u-psud.fr/Software

RNA Sequence, Structure and Function. Software for the analysis of differential processing events from RNA-seq data. Go to the RNAprof page. The RNA Motif search program. Go to the Erpin page. Pipeline for detection of prokaryote non-coding RNA from RNAseq data. Go to the DETR'PROK page.

4

RNA SSF - Web Tools

http://rna.igmors.u-psud.fr/toolbox

RNA Sequence, Structure and Function. This Web Server predicts the existence and location of rho-independent transcription terminators, using RNAmotif and ERPIN. Access to non-coding RNA prediction by Nucleic Acid Phylogenetic Profiling.

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LINKS TO THIS WEBSITE

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NAPP database

http://napp.u-psud.fr/Help.php

RNA Sequence, Structure and Function. 1 NAPP home page. 2 RNA-rich Cluster Page. 3 Cluster contents page. This web site provides a comprehensive access to NAPP results for over 1000 bacterial and archaeal genomes. 1 NAPP home page. 2 RNA-rich Cluster Page. This page presents a tabulated list of RNA rich clusters for the selected species, providing for each cluster the following information:. Number of elements in cluster. Number of annotated genes in cluster. Number of tiles in cluster. Exports CSV file ...

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