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rna.informatik.uni-freiburg.de

Freiburg RNA Tools

This web server provides online access to a series of tools developed by the Freiburg Bioinformatics Group. To start using it, please select from the listings below, or use the menu on the left. If you prefer doing a local installation on your machine, please visit our 'Download'. If you use our tools for research or education, please cite. The corresponding articles from the 'Publications'. Version 4.0.5. Carna is a tool for multiple alignment of RNA molecules based on their full. Carna computes the ali...

http://rna.informatik.uni-freiburg.de/

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Freiburg RNA Tools | rna.informatik.uni-freiburg.de Reviews
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This web server provides online access to a series of tools developed by the Freiburg Bioinformatics Group. To start using it, please select from the listings below, or use the menu on the left. If you prefer doing a local installation on your machine, please visit our 'Download'. If you use our tools for research or education, please cite. The corresponding articles from the 'Publications'. Version 4.0.5. Carna is a tool for multiple alignment of RNA molecules based on their full. Carna computes the ali...
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Freiburg RNA Tools | rna.informatik.uni-freiburg.de Reviews

https://rna.informatik.uni-freiburg.de

This web server provides online access to a series of tools developed by the Freiburg Bioinformatics Group. To start using it, please select from the listings below, or use the menu on the left. If you prefer doing a local installation on your machine, please visit our 'Download'. If you use our tools for research or education, please cite. The corresponding articles from the 'Publications'. Version 4.0.5. Carna is a tool for multiple alignment of RNA molecules based on their full. Carna computes the ali...

INTERNAL PAGES

rna.informatik.uni-freiburg.de rna.informatik.uni-freiburg.de
1

Help

http://rna.informatik.uni-freiburg.de/Help.jsp

For help with a particular tool, please select a link below. For general information and answers to frequently asked questions, please go to the FAQ. If you want to contact us please visit the email. Help for individual tools. Please select one of the following links to get tool-specific help information:. About this web server.

2

AntaRNA - Multi-obj. Sequence Design

http://rna.informatik.uni-freiburg.de/AntaRNA

AntaRNA - Multi-obj. Sequence Design. Multi-obj. Sequence Design. Insert SECIS in mRNA. AntaRNA - Multi-obj. Sequence Design. AntaRNA is an Ant-Colony Optimization based tool which solves the RNA inverse folding problem. It designs RNA sequences which satisfy a set of constraints made by the user. The realized multi-objective optimization allows to introduce structure, sequence and GC-content constraints. For articles describing the tool refer to the reference section below. Please cite us. Robert Kleink...

3

Result Retrieval

http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp

About this web server.

4

INFORNA - Sequence Design

http://rna.informatik.uni-freiburg.de/INFORNA

INFORNA - Sequence Design. Multi-obj. Sequence Design. Insert SECIS in mRNA. INFORNA - Sequence Design. INFO-RNA is a server for the design of RNA sequences that fold into a given pseudo-knot free RNA secondary structure. Here, you can get an example of the settings and the results. Some hints how to handle structures including small pseudo-knots can be found in the Help page. Note: SECISDesign is not maintained anymore. When using our tools. For more information check the help page. Hairpin loop ( input.

5

IntaRNA - RNA-RNA interaction

http://rna.informatik.uni-freiburg.de/IntaRNA

IntaRNA - RNA-RNA interaction. IntaRNA - RNA-RNA interaction. IntaRNA is a program for the fast and accurate prediction of interactions between two RNA molecules. It has been designed to predict mRNA target sites for given non-coding RNAs (ncRNAs) like eukaryotic microRNAs (miRNAs) or bacterial small RNAs (sRNAs), but it can also be used to predict other types of RNA-RNA interactions. For articles describing the tool refer to the reference section below. Please cite us. When using our tools. IntaRNA: eff...

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jonciwolff.com jonciwolff.com

Tools | Mitochondrial Genomics and Genome Evolution

http://jonciwolff.com/tools

Mitochondrial Genomics and Genome Evolution. Skip to primary content. Mitochondrial Art by Odra Noel. QC reads ( FastQC. NGS data analyses ( Galaxy. Nucleotide BLAST ( NCBI. TRNA search ( tRNAscan-SE. RNA analyses ( Freiburg RNA tools. MtDNA mutation prediction ( MutPred. Multiple sequence alignment ( PRALINE. Restriction sites ( NEBcutter. Primer design ( primer3. DNA weight converter ( weight. Comprehensive primer design and PCR analysis suite ( molbiol-tools. MtDNA data base ( mitozoa.

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ROBERT NUTTY & ASSOCIATES :: Home

Designed and developed by Boyle Design Group. Robert Nutty advises SME clients on issues including managing finances and operations, securing finance and investment, strategy, growth and acquisitions. Whether a company is at a crossroads, in crisis, or just reviewing where it stands and where it’s going, Robert provides a clear, objective appraisal, sound advice and expertise in implementing decisions.

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Laboratoire Sequence, Structure et Fonction des ARN

RNA Sequence, Structure and Function. Institut de Génétique et Microbiologie - UMR CNRS 8621. Université Paris-Sud - Bâtiment 400. 91405 Orsay Cedex - France. Phone : (33 1) 69 15 69 16 - Fax : (33 1) 69 15 46 29. We are seeking a skilled RNA/transcriptome bioinformatics expert. For an exciting new research project on human non-coding RNA and cancer. Please contact Daniel Gautheret. Professor, Université Paris-Sud. Claire TOFFANO-NIOCHE, Chargée de recherche, CNRS. Jia LI, PhD Student. Non-coding RNAs (n...

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Freiburg RNA Tools

This web server provides online access to a series of tools developed by the Freiburg Bioinformatics Group. To start using it, please select from the listings below, or use the menu on the left. If you prefer doing a local installation on your machine, please visit our 'Download'. If you use our tools for research or education, please cite. The corresponding articles from the 'Publications'. Version 4.0.5. Carna is a tool for multiple alignment of RNA molecules based on their full. Carna computes the ali...

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Home - RNA - Radio Nazionali Associate - Il ritmo del nostro tempo

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Server for Structural Biology. Vsfold4 and 5, vs subopt:. A new paradigm for finding optimal RNA secondary structures and pseudoknots by thermodynamics alone. Secondary structure and pseudoknots. Secondary structure and pseudoknots. Dawson, W., Suzuki, K. and Yamamoto, K. (2001) A physical origin for functional domain structure in nucleic acids as evidenced by cross-linking entropy. J Theor Biol. 213, 359-386 and 387-412. 1, 57-92. isbn: 81-7895-167-3. Journal of Nucleic Acids Investigation. Nakamura, S&...

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Skip to Main Content Area. Noncoding RNAs- the "Dark Matter" of the genome. In the post-sequencing era of the human genome, it is clear that genes play a vital role in determining health. However, most biological analysis of gene function has focused on the protein-encoding genes, which constitute a mere 1.4% of the human genome. This has left the rest of the genome mostly unexplored. This site contains resources for exploring this genomic "Dark Matter". Where can I find out more information? This projec...