dbtbs.hgc.jp

biodbs.info

DBD Database of Biological Biinformatics Database Database of biological Databases Database of Bioinformatics Database

http://www.biodbs.info/Db.html

Proceed by clicking the first alphabet of the keyword. BCIpep-A database of B-cell epitopes. Http:/ bioinformatics.uams.edu/mirror/bcipep/. Http:/ www.cabri.org/CABRI/srs-doc/bccm lmg.info.html. Http:/ bac.hs.med.kyoto-u.ac.jp/. HOBACGEN: Homologous Bacterial Genes Database. Http:/ pbil.univ-lyon1.fr/databases/hobacgen.html. Bacteria Servers and Databases. Http:/ biotech.icmb.utexas.edu/pages/science/bacteria.html. Archaeal and bacterial ABC transporters. Http:/ www-abcdb.biotoul.fr/. Http:/ www.fli-...

synbiomine.org

SynBioMine: Data Categories

http://www.synbiomine.org/synbiomine/dataCategories.do

Data mining for Synthetic Biology. SynBioMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included. Unless otherwise specified, the following organisms are loaded for each data source below. Bacillus amyloliquefaciens DSM 7 ( taxon 692420. Bacillus atrophaeus 1942 ( taxon 720555.

molbiol-tools.ca

DNA motifs

http://www.molbiol-tools.ca/DNA_Motifs.htm

While one can use established lists of motifs to search ones DNA sequence one can also discover them directly. In order to do this one has to derive a consensus sequence or probability matrix. In the case of bacterial proteins for which the binding sites have been determined good places to start are the E. coli. Am McGuire, Harvard University, U.S.A.),. A database of transcriptional regulation in Bacillus subtilis. See additional pages on Promoters. Ature Biotechnology, 2005, 23. On the next page. A 0 9 ...

fais.hgc.jp

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/index.html.en

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

fais.hgc.jp

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/index.html

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

fais.hgc.jp

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/index_en.html

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

fais.hgc.jp

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/member/alumni_ja.html

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

notthelab.blogspot.com

Not the Lab: Biology Resources

http://notthelab.blogspot.com/p/bio.html

Good science, bad science, and how chemistry can make the world awesome. These are resources related to biology that may be useful to chemists doing biology (or, I suppose, biologists doing biology). Feel free to contact me if you find any others that are generally useful; this list will grow. Http:/ dbtbs.hgc.jp/. From the site's description: "a collection of experimentally validated gene regulatory relations and the corresponding transcription factor binding sites upstream of B. subtilis. From the site...