nysgrc.org
Useful Tools
http://www.nysgrc.org/psi3/tools.html
Disorder prediction : DISOPRED,. Sequence searches : BLAST,. Signal peptide prediction : PHOBIUS. Crystallizability prediction: Xtalpred,. Database of comparative protein structure models : ModBase. Comparative modeling web-server : ModWeb. Comparative Modelling using multiple templates : M4T. Multiple Mapping Method : MMM. Homology detection by HMM-HMM comparison : HHPRED. Protein Structure Prediction : mGenTHREADER. Integrated Construct Design Interface: ICDI. Protein Structure Prediction : PSIPRED.
gps.biocuckoo.org
GPS 3.0 - Kinase-specific Phosphorylation Site Prediction
http://gps.biocuckoo.org/userguide.php
Last update: Sep. 10th, 2014. 8251; User Guide:. How to use GPS 3.0 software? You can find the latest version of GPS 3.0 at http:/ gps.biocuckoo.org/download.php. Then download and install the GPS 3.0 software to your computer.Currently, GPS 3.0 is implemented in JAVA and could be installed on a computer with Windows/Linux/Unix/Mac OS . And we also wrote a manual for users which included in the installation package. What's the difference between simple prediction and comprehensive prediction? The value c...
d2p2.pro
Disorder
http://www.d2p2.pro/about/predictors
Details on the predictors included in the database, both protein structure and disorder. Algorithm authorship is stated where necessary, as well as a contact details for all data providers. Search Instead ». This page contains brief descriptions of the predictors included in the D. If you have any specific comments or issues with a given predictors assignments a point of contact for that data provision is linked. For more general enquiries or comments please contact Matt Oates. Li,X, Romero,P. Genome Inf...
d2p2.pro
About - Database
http://www.d2p2.pro/about/database
Search Now ». Please cite the following if you make use of D. As well as papers for any original prediction methods used. Oates,M.E., Romero,P., Ishida,T., Ghalwash,M., Mizianty,M.J., Xue,B., Dosztányi,S., Uversky,V.N., Obradovic,Z., Kurgan,L., Dunker,A.K., Gough,J. (2013). "D2P2: Database of Disordered Protein Predictions.". D1):D508-D516 DOI: 10.1093/nar/gks1226. Website, and database analysis. VLXT and VSL2b predictions. Espritz and IUPred-L predictions. VLXT and VSL2b predictions.
msp.biocuckoo.org
GPS-MSP - Methyl-group Specific Predictor 1.0
http://www.msp.biocuckoo.org/userguide.php
Last update: Aug. 10th, 2012. How to use GPS-MSP 1.0 software? You can find the latest version of GPS-MSP 1.0 at http:/ msp.biocuckoo.org/download.php. Then download and install the GPS 3.0 software to your computer.Currently, GPS-MSP 1.0 is implemented in JAVA and could be installed on a computer with Windows/Linux/Unix/Mac OS . And we also wrote a manual for users which included in the installation package. What's the difference between simple prediction and comprehensive prediction? The value calculat...
pottslab.org
The Potts Lab - UT Southwestern Medical Center
http://www.pottslab.org//links/index.html
Return to: Department of Cell and Molecular Biology. St Jude Home Page. Bull; About Us. Bull; Lab Fun. Bull; Positions Available. Bull; Contact Us. Bull; Member Area. Nucleic Acid Analysis Tools. Cell and Tissue Imaging. Department of Cell and Molecular Biology. Proteomics and Mass Spectrometry. Transgenic / Gene Knockout. Vector Development and Production. Nucleic Acid Analysis Tools. Agilent BioTools (PCR Primer Tm / Stratalinker Calculator). GenScript Sequencing Primer Design. St Jude PeCan Data Portal.
phospho.elm.eu.org
Phospho.ELM Help
http://phospho.elm.eu.org/help.html
A database of S/T/Y phosphorylation sites. Additional information about the substrate protein, which contains the phosphorylation site, pattern of expression, interaction partners and interaction network(s) (where available). Link to UniPROT/Ensembl entry. To allow retrieval of interacting genes/proteins and or NetworKIN. To allow the user to browse/search which kinase families are predicted to phosphorylate experimentally identified phosphorylation sites in vivo. Links to the Molecular INTeractions.
anchor.enzim.hu
ANCHOR
http://anchor.enzim.hu/Help.php
Prediction of Protein Binding Regions in Disordered Proteins. There are two ways to input a protein sequence:. If the protein is deposited in the UniProt database (either in SwissProt or TrEMBL) you can specify the accession code or the ID of the protein in the "Enter SWISS-PROT/TrEMBL identifier or accession number". Filed The ANCHOR server is always linked to newest version of UniProt. The header of the UniProt entry will be displayed as the title in the results page. Name of the sequence. LIG SH3 1 LI...
